Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs4731108 chr7:123130552 T/G 5.0E-6 295 23.42 18.27 3.72 KM Plot
CESC rs4731110 chr7:123169195 A/C 5.93E-13 293 23.42 18.17 3.97 KM Plot
CESC rs4735812 chr8:607766 C/G 9.21E-5 294 4.2 19.17 21.23 KM Plot
CESC rs4758502 chr11:2998461 C/T 1.62E-5 297 21.2 22.83 21.73 KM Plot
CESC rs4758619 chr11:2996114 T/C 2.0E-5 292 21.13 22.88 21.43 KM Plot
CESC rs4758620 chr11:3005670 G/A 7.28E-5 293 21.68 22.83 20.63 KM Plot
CESC rs4758621 chr11:3009640 C/T 1.72E-5 299 21.13 21.1 21.97 KM Plot
CESC rs4766619 chr12:110121111 A/C 4.6E-5 299 21.2 23.3 14.4 KM Plot
CESC rs4839827 chr6:96853967 C/T 1.64E-5 287 25.8 19.2 24.3 KM Plot
CESC rs4843884 chr16:86030100 A/G 1.92E-6 299 21.4 20.23 5.53 KM Plot
CESC rs4856703 chr3:161047720 G/T 9.95E-6 297 26.27 20.38 19.05 KM Plot
CESC rs4856767 chr3:161004379 C/T 8.49E-5 295 28.7 20.43 19.05 KM Plot
CESC rs4856768 chr3:161004392 G/A 8.03E-5 295 27.9 21.68 18.25 KM Plot
CESC rs489152 chr17:72888836 G/A 2.16E-5 299 15.33 27.9 21.2 KM Plot
CESC rs4904666 chr14:90738315 T/C 9.11E-5 297 20.5 21.2 24.62 KM Plot